TENET.ExperimentHub
This is the development version of TENET.ExperimentHub; to use it, please install the devel version of Bioconductor.
Experiment data for the TENET package
Bioconductor version: Development (3.21)
ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.
Author: Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (ORCID:
Maintainer: Rhie Lab at the University of Southern California <rhielab at gmail.com>
citation("TENET.ExperimentHub")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TENET.ExperimentHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TENET.ExperimentHub")| Using the TENET.ExperimentHub datasets | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BreastCancerData, CancerData, CellCulture, ExperimentData, ExperimentHub, ExpressionData, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, RNASeqData, Tissue |
| Version | 0.99.2 |
| License | GPL-2 |
| Depends | R (>= 4.5) |
| Imports | ExperimentHub, SummarizedExperiment, MultiAssayExperiment, GenomicRanges, methods |
| System Requirements | |
| URL | https://github.com/rhielab/TENET.ExperimentHub |
| Bug Reports | https://github.com/rhielab/TENET.ExperimentHub/issues |
See More
| Suggests | ExperimentHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | TENET |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TENET.ExperimentHub_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TENET.ExperimentHub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TENET.ExperimentHub |
| Package Short Url | https://bioconductor.org/packages/TENET.ExperimentHub/ |
| Package Downloads Report | Download Stats |